Sopen04g028140

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0000711 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000711_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g028140
Cluster	HCCA clusters: Cluster_339

Target	Alias	Description	ECC score	Gene Family Method
At2g23350	No alias	Polyadenylate-binding protein 4...	0.02	Orthogroups_2024-Update
At4g34110	No alias	Polyadenylate-binding protein...	0.03	Orthogroups_2024-Update
GRMZM5G899926	No alias	poly(A) binding protein 8	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	50	119
IPR000504	RRM_dom	331	398
IPR000504	RRM_dom	228	296
IPR000504	RRM_dom	138	206
IPR002004	PABP_HYD	566	632

External Links

No external refs found!