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  5. Sopen04g028340

Sopen04g028340


Description : PPR repeat family


Gene families : OG_42_0010081 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010081_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g028340
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi1g45290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G071986 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G199800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Solyc04g072170 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 440 564
IPR002885 Pentatricopeptide_repeat 270 314
IPR002885 Pentatricopeptide_repeat 166 212
IPR002885 Pentatricopeptide_repeat 140 165
IPR002885 Pentatricopeptide_repeat 239 265
IPR002885 Pentatricopeptide_repeat 342 366
IPR002885 Pentatricopeptide_repeat 69 94
No external refs found!