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  5. Sopen04g028530

Sopen04g028530


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000867 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000867_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g028530
Cluster HCCA clusters: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
A4A49_25786 No alias f-boxlrr-repeat protein 0.02 Orthogroups_2024-Update
A4A49_32034 No alias putative f-boxlrr-repeat protein 0.03 Orthogroups_2024-Update
Solyc01g065740 No alias F-box family protein (AHRD V3.3 *** B9GFH4_POPTR) 0.04 Orthogroups_2024-Update
Solyc02g065440 No alias F-box/RNI-like/FBD-like domains-containing protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029472 Copia-like_N 26 70
IPR005162 Retrotrans_gag_dom 90 196
No external refs found!