Sopen04g029190

Description : Pumilio-family RNA binding repeat

Gene families : OG_42_0001160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001160_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g029190
Cluster	HCCA clusters: Cluster_224

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g15337	No alias	pumilio 12	0.02	Orthogroups_2024-Update
Mp1g09040.1	No alias	Pumilio homolog 12 OS=Arabidopsis thaliana...	0.02	Orthogroups_2024-Update
Solyc01g028800	No alias	RNA binding protein, putative (AHRD V3.3 *** B9SBN7_RICCO)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001313	Pumilio_RNA-bd_rpt	453	485
IPR001313	Pumilio_RNA-bd_rpt	599	628
IPR001313	Pumilio_RNA-bd_rpt	377	406
IPR001313	Pumilio_RNA-bd_rpt	491	522
IPR001313	Pumilio_RNA-bd_rpt	530	548

External Links

No external refs found!