Sopen04g029720

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0009661 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009661_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g029720
Cluster	HCCA clusters: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
A4A49_31282	No alias	29 kda ribonucleoprotein a, chloroplastic	0.03	Orthogroups_2024-Update
Bradi3g38527	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Orthogroups_2024-Update
GRMZM2G023591	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Orthogroups_2024-Update
HORVU0Hr1G016150.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Potri.005G161000	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Orthogroups_2024-Update
Seita.6G186800.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc04g074750	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD...	0.12	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	177	248
IPR000504	RRM_dom	87	152

External Links

No external refs found!