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  5. Sopen04g030360

Sopen04g030360


Description : Rhamnogalacturonate lyase family


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g030360
Cluster HCCA clusters: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
A4A49_15979 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Potri.002G110200 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Potri.006G253601 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Pp1s60_134V6 No alias F21M12.30; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.3G119000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G003600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G173300.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.008G016500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 20 230
IPR029411 RG-lyase_III 470 659
IPR029413 RG-lyase_II 384 455
No external refs found!