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  5. Sopen04g031270

Sopen04g031270


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen04g031270
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Solyc08g021810 No alias No description available 0.02 Orthogroups_2024-Update
Sopen04g011060 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen06g011320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g007410 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g005690 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_2214.1 No alias (p10978|polx_tobac : 144.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update
evm.model.contig_4573.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004185 serine-type carboxypeptidase activity IEA InterProScan predictions
BP GO:0006508 proteolysis IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 1035 1275
IPR001584 Integrase_cat-core 631 744
IPR025724 GAG-pre-integrase_dom 554 617
IPR001563 Peptidase_S10 1500 1791
No external refs found!