Sopen04g036410

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0000483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000483_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen04g036410
Cluster	HCCA clusters: Cluster_189

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14499	No alias	putative rna-binding protein arp1	0.03	Orthogroups_2024-Update
At1g22910	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein...	0.02	Orthogroups_2024-Update
Brara.D02818.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Brara.H02307.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.I03319.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Glyma.07G050000	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Orthogroups_2024-Update
Glyma.09G234200	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Orthogroups_2024-Update
HORVU7Hr1G093450.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os01g72834	No alias	RNA recognition motif containing protein, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00018643-RA	No alias	(at1g20880 : 184.0) RNA-binding (RRM/RBD/RNP motifs)...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	36	92

External Links

No external refs found!