1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen05g001180

Sopen05g001180


Description : Glycosyl hydrolases family 28


Gene families : OG_42_0002044 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002044_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g001180
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
At1g10640 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
Bradi2g14881 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.F00711.1 No alias polygalacturonase *(PGX1-like) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.H02750.1 No alias polygalacturonase *(PGX1-like) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.I01561.1 No alias polygalacturonase *(PGX1-like) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.I05215.1 No alias polygalacturonase *(PGX1-like) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Potri.008G189200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 113 191
IPR000743 Glyco_hydro_28 231 449
No external refs found!