Sopen05g002150

Description : DEAD/DEAH box helicase

Gene families : OG_42_0008403 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g002150
Cluster	HCCA clusters: Cluster_236

Target	Alias	Description	ECC score	Gene Family Method
A4A49_17944	No alias	dead-box atp-dependent rna helicase 22	0.04	Orthogroups_2024-Update
At1g59990	No alias	DEAD-box ATP-dependent RNA helicase 22...	0.06	Orthogroups_2024-Update
Bradi4g29520	No alias	DEA(D/H)-box RNA helicase family protein	0.05	Orthogroups_2024-Update
Brara.A02449.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Glyma.18G132200	No alias	DEA(D/H)-box RNA helicase family protein	0.07	Orthogroups_2024-Update
Kfl00129_0030	kfl00129_0030_v1.1	(at1g59990 : 167.0) DEA(D/H)-box RNA helicase family...	0.02	Orthogroups_2024-Update
LOC_Os09g21520	No alias	DEAD-box ATP-dependent RNA helicase, putative, expressed	0.02	Orthogroups_2024-Update
Potri.008G193800	No alias	DEA(D/H)-box RNA helicase family protein	0.07	Orthogroups_2024-Update
Seita.2G194600.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.002G191100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc05g006130	No alias	RNA helicase DEAD17	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	414	506
IPR011545	DEAD/DEAH_box_helicase_dom	90	260

External Links

No external refs found!