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  5. Solyc02g065510

Solyc02g065510


Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T4W2_RICCO)


Gene families : OG_42_0008027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008027_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g065510
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G179201 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.5G117900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.003G055000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen02g015710 No alias PPR repeat family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004615 phosphomannomutase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009225 nucleotide-sugar metabolic process IEP Predicted GO
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Predicted GO
BP GO:0009298 GDP-mannose biosynthetic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0019673 GDP-mannose metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 486 514
IPR002885 Pentatricopeptide_repeat 171 220
IPR002885 Pentatricopeptide_repeat 551 598
No external refs found!