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  5. Sopen05g002940

Sopen05g002940


Description : Homeobox domain


Gene families : OG_42_0000105 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000105_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g002940
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bradi4g29380 No alias homeobox 1 0.04 Orthogroups_2024-Update
Brara.C00130.1 No alias regulatory protein *(LMI1) of floral meristem identity... 0.03 Orthogroups_2024-Update
Brara.G01237.1 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.08G295800 No alias homeobox 1 0.05 Orthogroups_2024-Update
HORVU6Hr1G072810.6 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os09g35910 No alias homeobox associated leucine zipper, putative, expressed 0.02 Orthogroups_2024-Update
MA_128g0010 No alias (at1g69780 : 137.0) Encodes a homeodomain leucine zipper... 0.02 Orthogroups_2024-Update
MA_169305g0010 No alias (at2g22430 : 149.0) Encodes a homeodomain leucine zipper... 0.02 Orthogroups_2024-Update
PSME_00014389-RA No alias (at1g69780 : 146.0) Encodes a homeodomain leucine zipper... 0.02 Orthogroups_2024-Update
PSME_00033843-RA No alias (at3g01470 : 181.0) Encodes a homeodomain leucine zipper... 0.03 Orthogroups_2024-Update
Seita.1G253700.1 No alias HD-ZIP I/II-type transcription factor 0.04 Orthogroups_2024-Update
Seita.6G145000.1 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G253900.1 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g096320 No alias Homeobox-leucine zipper protein (AHRD V3.3 *** M4W1Z7_TOBAC) 0.04 Orthogroups_2024-Update
Solyc05g006980 No alias Homeobox leucine zipper family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen01g040080 No alias Homeobox domain 0.03 Orthogroups_2024-Update
Sopen03g022310 No alias Homeobox domain 0.04 Orthogroups_2024-Update
Sopen06g018290 No alias Homeobox domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0043565 sequence-specific DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 96 137
IPR001356 Homeobox_dom 41 94
No external refs found!