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  5. Sopen05g003050

Sopen05g003050


Description : Pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g003050
Cluster HCCA clusters: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
Brara.G00648.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.05 Orthogroups_2024-Update
Brara.J02392.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Glyma.08G296900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.19G053800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_103716g0010 No alias (at1g67750 : 486.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00020308-RA No alias (at4g13710 : 598.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Solyc05g007080 No alias Alpha-amylase (AHRD V3.3 *** K4BWN3_SOLLC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 190 375
IPR007524 Pec_lyase_N 29 79
No external refs found!