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  5. Sopen05g003240

Sopen05g003240


Description : Regulator of chromosome condensation (RCC1) repeat


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g003240
Cluster HCCA clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G299051 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Seita.4G097300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G275500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g081250 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 970 1024
IPR027988 BRX_N 889 922
IPR000306 Znf_FYVE 633 699
IPR000408 Reg_chr_condens 412 460
IPR000408 Reg_chr_condens 529 577
IPR000408 Reg_chr_condens 476 525
IPR000408 Reg_chr_condens 305 353
IPR000408 Reg_chr_condens 582 629
IPR000408 Reg_chr_condens 356 408
No external refs found!