Sopen05g003600

Description : DYW family of nucleic acid deaminases

Gene families : OG_42_0002868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002868_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g003600
Cluster	HCCA clusters: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
At2g15690	No alias	Pentatricopeptide repeat-containing protein At2g15690,...	0.02	Orthogroups_2024-Update
LOC_Os01g53610	No alias	selenium-binding protein, related, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00015245-RA	No alias	(at4g30700 : 341.0) Pentatricopeptide repeat (PPR)...	0.02	Orthogroups_2024-Update
Seita.5G310400.1	No alias	RNA editing factor (MEF8) & RNA editing factor (DYW2)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	402	430
IPR002885	Pentatricopeptide_repeat	433	461
IPR002885	Pentatricopeptide_repeat	340	357
IPR032867	DYW_dom	596	717

External Links

No external refs found!