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  5. Solyc02g065650

Solyc02g065650


Description : LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G02340.2)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g065650
Cluster HCCA clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Bradi1g52440 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g56300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.C00961.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.02 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G002870.3 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os12g02620 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10435153g0010 No alias (at3g19950 : 192.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00032072-RA No alias (at3g56580 : 108.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Seita.6G190900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G386000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G327100.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 316 358
No external refs found!