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  5. Sopen05g004400

Sopen05g004400


Description : PPR repeat family


Gene families : OG_42_0009239 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009239_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g004400
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Bradi4g42330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Sobic.005G038500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 561 619
IPR002885 Pentatricopeptide_repeat 491 546
IPR002885 Pentatricopeptide_repeat 642 690
IPR002885 Pentatricopeptide_repeat 329 376
IPR002885 Pentatricopeptide_repeat 257 306
IPR002885 Pentatricopeptide_repeat 432 481
IPR002885 Pentatricopeptide_repeat 393 424
No external refs found!