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  5. Sopen05g004600

Sopen05g004600


Description : Ring finger domain


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g004600
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_05648 No alias putative e3 ubiquitin-protein ligase hip1 0.02 Orthogroups_2024-Update
A4A49_23702 No alias putative e3 ubiquitin-protein ligase hip1 0.03 Orthogroups_2024-Update
At1g17970 No alias At1g17970/F2H15_16 [Source:UniProtKB/TrEMBL;Acc:Q944L9] 0.02 Orthogroups_2024-Update
Bradi5g20760 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00366.1 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.03 Orthogroups_2024-Update
Brara.F00132.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J00595.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G165044 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G018800.2 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os04g51400 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47670 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.4G247100.1 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.02 Orthogroups_2024-Update
Seita.7G272600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.003G061900.2 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc05g008840 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1) 0.08 Orthogroups_2024-Update
Solyc10g084710 No alias LOW QUALITY:Beta-glucosidase, GBA2 type family protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 199 241
No external refs found!