1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen05g005200

Sopen05g005200


Description : PPR repeat


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g005200
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi4g03700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.I01471.1 No alias RNA editing factor *(MEF9) 0.05 Orthogroups_2024-Update
GRMZM2G077320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G096900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G349800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
MA_356g0010 No alias (at3g23330 : 487.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00024555-RA No alias (at4g02750 : 413.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.004G125500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Sobic.001G117600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G182600.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc05g009400 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 96 122
IPR002885 Pentatricopeptide_repeat 124 151
IPR002885 Pentatricopeptide_repeat 391 415
IPR002885 Pentatricopeptide_repeat 187 216
IPR002885 Pentatricopeptide_repeat 155 183
IPR002885 Pentatricopeptide_repeat 25 52
IPR002885 Pentatricopeptide_repeat 217 244
IPR002885 Pentatricopeptide_repeat 317 363
No external refs found!