1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen05g005620

Sopen05g005620


Description : B3 DNA binding domain


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g005620
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
A4A49_27413 No alias ap2erf and b3 domain-containing transcription factor rav1 0.04 Orthogroups_2024-Update
At1g25560 No alias AP2/ERF and B3 domain-containing transcription repressor... 0.03 Orthogroups_2024-Update
At1g68840 No alias TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0] 0.04 Orthogroups_2024-Update
Brara.D02192.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E00866.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I03099.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
GRMZM2G082227 No alias AP2/B3-like transcriptional factor family protein 0.02 Orthogroups_2024-Update
GRMZM2G159592 No alias related to ABI3/VP1 1 0.02 Orthogroups_2024-Update
GRMZM2G169654 No alias related to ABI3/VP1 2 0.02 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.02G099500 No alias AP2/B3 transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.10G204400 No alias AP2/B3 transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.20G186200 No alias AP2/B3 transcription factor family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
LOC_Os01g04800 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g49830 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g45850 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g06080 No alias expressed protein 0.02 Orthogroups_2024-Update
Potri.010G129200 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Pp1s135_69V6 No alias ap2 domain-containing transcription factor 0.02 Orthogroups_2024-Update
Sobic.003G265200.1 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 207 306
IPR001471 AP2/ERF_dom 71 119
No external refs found!