Sopen05g006830

Description : SBP domain

Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g006830
Cluster	HCCA clusters: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
At1g69170	No alias	Squamosa promoter-binding-like protein 6...	0.02	Orthogroups_2024-Update
Cre17.g698233	No alias	squamosa promoter binding protein-like 2	0.02	Orthogroups_2024-Update
HORVU5Hr1G076380.9	No alias	SBP-type transcription factor	0.03	Orthogroups_2024-Update
Potri.002G142200	No alias	squamosa promoter binding protein-like 8	0.02	Orthogroups_2024-Update
Pp1s194_53V6	No alias	squamosa promoter binding protein 3	0.03	Orthogroups_2024-Update
Solyc05g015840	No alias	Squamosa promoter binding protein 13	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	234	307

External Links

No external refs found!