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  5. Sopen05g008430

Sopen05g008430


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g008430
Cluster HCCA clusters: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
A4A49_06501 No alias retrovirus-related pol polyprotein from transposon tnt 1-94 0.02 Orthogroups_2024-Update
Kfl00841_g1 kfl00841_g1_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os01g15690 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
MpVg00320.1 No alias No annotation 0.03 Orthogroups_2024-Update
Solyc01g067050 No alias No description available 0.02 Orthogroups_2024-Update
Solyc02g005160 No alias No description available 0.02 Orthogroups_2024-Update
Solyc03g093580 No alias No description available 0.03 Orthogroups_2024-Update
Solyc06g011300 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g011400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g014570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g025280 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen01g027290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen04g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g026350 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen07g005860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g006540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g027810 No alias gag-polypeptide of LTR copia-type 0.02 Orthogroups_2024-Update
Sopen10g015220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g022040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 3 102
IPR013103 RVT_2 285 528
No external refs found!