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  5. Sopen05g008950

Sopen05g008950


Description : Pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g008950
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
A4A49_25977 No alias pectate lyase 0.03 Orthogroups_2024-Update
At4g13210 No alias Putative pectate lyase 14... 0.02 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.05G044000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G244900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G112600 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G075970.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sobic.010G176400.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g014000 No alias Pectate lyase (AHRD V3.3 *** M1AQF5_SOLTU) 0.04 Orthogroups_2024-Update
Sopen09g034360 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 133 318
No external refs found!