1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen05g009630

Sopen05g009630


Description : Integrase core domain


Gene families : OG_42_0001200 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001200_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g009630
Cluster HCCA clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
At3g21000 No alias Gag-Pol-related retrotransposon family protein... 0.03 Orthogroups_2024-Update
PSME_00021141-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00026045-RA No alias (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00044232-RA No alias (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00055602-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 264 307
IPR001584 Integrase_cat-core 325 421
No external refs found!