Sopen05g011340


Description : Integrase core domain


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g011340
Cluster HCCA clusters: Cluster_361

Target Alias Description ECC score Gene Family Method Actions
HORVU0Hr1G011670.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os06g19350 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g061440 No alias No description available 0.04 Orthogroups_2024-Update
Solyc09g059000 No alias No description available 0.03 Orthogroups_2024-Update
Solyc12g038850 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g008200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g022180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g012390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g035450 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen04g010080 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g030350 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update
Sopen05g026780 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen07g005780 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g022600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g022720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g027580 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 180 241
IPR001584 Integrase_cat-core 946 1057
IPR000477 RT_dom 610 679
IPR023780 Chromo_domain 1251 1293
No external refs found!