Sopen05g011450

Description : SBP domain

Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g011450
Cluster	HCCA clusters: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
At5g50570	No alias	Squamosa promoter-binding-like protein 13B...	0.03	Orthogroups_2024-Update
Brara.F03810.1	No alias	SBP-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I01777.1	No alias	SBP-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J00007.1	No alias	SBP-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.03G117500	No alias	squamosa promoter binding protein-like 8	0.03	Orthogroups_2024-Update
Glyma.03G143100	No alias	squamosa promoter binding protein-like 9	0.03	Orthogroups_2024-Update
Glyma.04G197100	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.03	Orthogroups_2024-Update
Glyma.11G163828	No alias	squamosa promoter binding protein-like 9	0.02	Orthogroups_2024-Update
Glyma.16G054500	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.03	Orthogroups_2024-Update
Glyma.17G080700	No alias	Squamosa promoter-binding protein-like (SBP domain)...	0.03	Orthogroups_2024-Update
LOC_Os09g31438	No alias	OsSPL17 - SBP-box gene family member, expressed	0.02	Orthogroups_2024-Update
Potri.014G057800	No alias	squamosa promoter binding protein-like 10	0.03	Orthogroups_2024-Update
Solyc07g062980	No alias	Squamosa promoter-binding protein, putative (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	20	93

External Links

No external refs found!