1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen05g014540

Sopen05g014540


Description : SpoU rRNA Methylase family


Gene families : OG_42_0006935 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006935_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g014540
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Brara.G00092.1 No alias MRM1-type rRNA methyltransferase 0.03 Orthogroups_2024-Update
Cre13.g566150 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.02 Orthogroups_2024-Update
GRMZM2G097282 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.02 Orthogroups_2024-Update
Glyma.08G033500 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.02 Orthogroups_2024-Update
Kfl00564_0050 kfl00564_0050_v1.1 (at2g19870 : 237.0) tRNA/rRNA methyltransferase (SpoU)... 0.03 Orthogroups_2024-Update
LOC_Os01g53890 No alias RNA methyltransferase, TrmH family protein, putative, expressed 0.02 Orthogroups_2024-Update
Solyc05g017990 No alias TRNA/rRNA methyltransferase family protein (AHRD V3.3... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
MF GO:0008173 RNA methyltransferase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001537 SpoU_MeTrfase 257 381
IPR013123 SpoU_subst-bd 155 238
No external refs found!