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  5. PSME_00000012-RA

PSME_00000012-RA


Description : (at2g30520 : 298.0) light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis; ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 865 Blast hits to 833 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 860; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q5ks50|nph3_orysa : 110.0) Coleoptile phototropism protein 1 (Non-phototropic hypocotyl 3-like protein) (NPH3-like protein) - Oryza sativa (Rice) & (reliability: 596.0) & (original description: no original description)


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000012-RA
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
A4A49_09404 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
A4A49_15233 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
A4A49_23551 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
At2g23050 No alias BTB/POZ domain-containing protein NPY4... 0.03 Orthogroups_2024-Update
At5g03250 No alias BTB/POZ domain-containing protein At5g03250... 0.05 Orthogroups_2024-Update
Bradi1g70761 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Bradi4g30480 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Brara.D01192.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 Orthogroups_2024-Update
Brara.F02310.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Brara.H01725.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Brara.I00846.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
GRMZM2G033267 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
GRMZM2G353024 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.04G060800 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.05G104000 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.05G178500 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.08G135600 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.10G020800 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.11G061200 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.14G206100 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.17G163500 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G023260.4 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G046340.1 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
HORVU5Hr1G064620.2 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
HORVU5Hr1G098170.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G015480.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
LOC_Os03g52880 No alias BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain... 0.05 Orthogroups_2024-Update
LOC_Os12g39380 No alias BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
Mp4g20760.1 No alias BTB/POZ domain-containing protein At1g30440... 0.03 Orthogroups_2024-Update
Potri.011G091100 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Pp1s108_73V6 No alias transposon protein mutator sub-class 0.02 Orthogroups_2024-Update
Pp1s53_256V6 No alias root phototropism 0.03 Orthogroups_2024-Update
Pp1s67_83V6 No alias protein binding 0.02 Orthogroups_2024-Update
Seita.3G369000.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Seita.8G012000.1 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Seita.9G158400.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 Orthogroups_2024-Update
Sobic.001G463200.1 No alias substrate adaptor *(NCL/NCH) of CUL3-BTB E3 ubiquitin... 0.02 Orthogroups_2024-Update
Solyc11g066730 No alias phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Sopen02g014820 No alias NPH3 family 0.03 Orthogroups_2024-Update
Sopen06g002790 No alias NPH3 family 0.03 Orthogroups_2024-Update
Sopen07g022670 No alias NPH3 family 0.02 Orthogroups_2024-Update
Sopen09g023980 No alias NPH3 family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 130 353
No external refs found!