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  5. PSME_00000030-RA

PSME_00000030-RA


Description : (at2g34510 : 371.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT1G29980.1); Has 305 Blast hits to 265 proteins in 22 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 742.0) & (original description: no original description)


Gene families : OG_42_0000355 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000355_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000030-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Bradi2g50250 No alias Protein of unknown function, DUF642 0.02 Orthogroups_2024-Update
Brara.A03541.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02541.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03158.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G03740.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I02852.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G101460.2 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g42520 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os01g55190 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os02g11040 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os03g59300 No alias expressed protein 0.02 Orthogroups_2024-Update
PSME_00031732-RA No alias (at5g25460 : 95.9) Protein of unknown function, DUF642;... 0.04 Orthogroups_2024-Update
Potri.001G263900 No alias Protein of unknown function, DUF642 0.05 Orthogroups_2024-Update
Potri.018G031100 No alias Protein of unknown function, DUF642 0.04 Orthogroups_2024-Update
Sobic.006G133100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g034510 No alias Protein of unknown function (DUF642) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006946 DUF642 204 369
IPR006946 DUF642 36 192
No external refs found!