1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00000090-RA

PSME_00000090-RA


Description : (at5g58420 : 423.0) Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p46300|rs4_soltu : 419.0) 40S ribosomal protein S4 - Solanum tuberosum (Potato) & (reliability: 846.0) & (original description: no original description)


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000090-RA
Cluster HCCA clusters: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
148442 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Orthogroups_2024-Update
A4A49_10798 No alias 40s ribosomal protein s4 0.04 Orthogroups_2024-Update
A4A49_59874 No alias 40s ribosomal protein s4 0.04 Orthogroups_2024-Update
At2g17360 No alias 40S ribosomal protein S4-1... 0.03 Orthogroups_2024-Update
At5g07090 No alias 40S ribosomal protein S4-2... 0.02 Orthogroups_2024-Update
At5g58420 No alias 40S ribosomal protein S4-3... 0.03 Orthogroups_2024-Update
Bradi2g35620 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Orthogroups_2024-Update
Brara.B00233.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.B01147.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.C01137.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.J01227.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.J02486.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Cre06.g308250 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Orthogroups_2024-Update
Glyma.02G263200 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 Orthogroups_2024-Update
HORVU1Hr1G021720.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Kfl00456_0140 kfl00456_0140_v1.1 (p46299|rs4_goshi : 404.0) 40S ribosomal protein S4 -... 0.01 Orthogroups_2024-Update
MA_127596g0010 No alias (at5g58420 : 436.0) Ribosomal protein S4 (RPS4A) family... 0.04 Orthogroups_2024-Update
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.02 Orthogroups_2024-Update
Pp1s2_16V6 No alias 40s ribosomal protein s4 0.02 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.05 Orthogroups_2024-Update
Pp1s39_422V6 No alias 40s ribosomal s4 protein 0.06 Orthogroups_2024-Update
Pp1s461_1V6 No alias 40s ribosomal protein s4 0.04 Orthogroups_2024-Update
Seita.3G036600.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Seita.3G268400.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.001G018900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Sobic.003G160900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Solyc02g070320 No alias No description available 0.07 Orthogroups_2024-Update
Solyc02g070330 No alias 40S ribosomal protein S4 (AHRD V3.3 *-* RS4_SOLTU) 0.04 Orthogroups_2024-Update
Solyc02g070340 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.02 Orthogroups_2024-Update
Solyc02g070360 No alias No description available 0.07 Orthogroups_2024-Update
Sopen02g019410 No alias Ribosomal family S4e 0.07 Orthogroups_2024-Update
Sopen02g019430 No alias Ribosomal family S4e 0.03 Orthogroups_2024-Update
Sopen02g019440 No alias Ribosomal family S4e 0.08 Orthogroups_2024-Update
Sopen02g019450 No alias Ribosomal family S4e 0.08 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
BP GO:0006879 cellular iron ion homeostasis IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055072 iron ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032277 40S_S4_C 213 259
IPR005824 KOW 178 211
IPR013845 Ribosomal_S4e_central_region 96 170
IPR013843 Ribosomal_S4e_N 4 38
IPR002942 S4_RNA-bd 44 91
No external refs found!