Description : (at3g12810 : 1465.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 275.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2930.0) & (original description: no original description)
Gene families : OG_42_0005242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005242_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00000156-RA | |
Cluster | HCCA clusters: Cluster_215 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g57635 | No alias | SNF2 domain-containing protein / helicase... | 0.05 | Orthogroups_2024-Update | |
Cre14.g618860 | No alias | SNF2 domain-containing protein / helicase... | 0.02 | Orthogroups_2024-Update | |
GRMZM2G428242 | No alias | SNF2 domain-containing protein / helicase... | 0.02 | Orthogroups_2024-Update | |
Glyma.02G174100 | No alias | SNF2 domain-containing protein / helicase... | 0.04 | Orthogroups_2024-Update | |
Glyma.09G112200 | No alias | SNF2 domain-containing protein / helicase... | 0.04 | Orthogroups_2024-Update | |
MA_64269g0010 | No alias | (at3g12810 : 204.0) Encodes a protein similar to... | 0.03 | Orthogroups_2024-Update | |
Mp7g15670.1 | No alias | ATPase component PIE1 of SWR1 chromatin remodeling complex | 0.02 | Orthogroups_2024-Update | |
Pp1s452_20V6 | No alias | helicase swr1 | 0.02 | Orthogroups_2024-Update | |
Seita.1G278400.1 | No alias | ATPase component *(PIE1) of SWR1 chromatin remodeling complex | 0.05 | Orthogroups_2024-Update | |
Sopen03g015780 | No alias | SNF2 family N-terminal domain | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_4474.1 | No alias | (at3g12810 : 667.0) Encodes a protein similar to... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000194.26 | No alias | (at3g12810 : 251.0) Encodes a protein similar to... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | IEP | Predicted GO |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
MF | GO:0005086 | ARF guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005096 | GTPase activator activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
BP | GO:0006099 | tricarboxylic acid cycle | IEP | Predicted GO |
BP | GO:0006101 | citrate metabolic process | IEP | Predicted GO |
BP | GO:0006479 | protein methylation | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0008213 | protein alkylation | IEP | Predicted GO |
MF | GO:0008276 | protein methyltransferase activity | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Predicted GO |
BP | GO:0009966 | regulation of signal transduction | IEP | Predicted GO |
BP | GO:0010646 | regulation of cell communication | IEP | Predicted GO |
BP | GO:0015977 | carbon fixation | IEP | Predicted GO |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016571 | histone methylation | IEP | Predicted GO |
MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
BP | GO:0016999 | antibiotic metabolic process | IEP | Predicted GO |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
MF | GO:0019899 | enzyme binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0023051 | regulation of signaling | IEP | Predicted GO |
CC | GO:0030120 | vesicle coat | IEP | Predicted GO |
CC | GO:0030126 | COPI vesicle coat | IEP | Predicted GO |
MF | GO:0030695 | GTPase regulator activity | IEP | Predicted GO |
MF | GO:0031683 | G-protein beta/gamma-subunit complex binding | IEP | Predicted GO |
BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Predicted GO |
BP | GO:0032259 | methylation | IEP | Predicted GO |
BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
MF | GO:0042054 | histone methyltransferase activity | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
BP | GO:0043414 | macromolecule methylation | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
CC | GO:0044433 | cytoplasmic vesicle part | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Predicted GO |
BP | GO:0048583 | regulation of response to stimulus | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Predicted GO |
BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Predicted GO |
No external refs found! |