Sopen05g017070

Description : Photosystem II protein

Gene families : OG_42_0002336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002336_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen05g017070
Cluster	HCCA clusters: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
137729	No alias	photosystem II reaction center protein B	0.03	Orthogroups_2024-Update
Bradi1g05740	No alias	photosystem II reaction center protein B	0.03	Orthogroups_2024-Update
Bradi5g09702	No alias	photosystem II reaction center protein B	0.03	Orthogroups_2024-Update
Brara.E02421.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
PSME_00000999-RA	No alias	(p41624\|psbb_pinth : 441.0) Photosystem II P680...	0.02	Orthogroups_2024-Update
PSME_00001743-RA	No alias	(p41624\|psbb_pinth : 223.0) Photosystem II P680...	0.02	Orthogroups_2024-Update
PSME_00047959-RA	No alias	(p41624\|psbb_pinth : 521.0) Photosystem II P680...	0.02	Orthogroups_2024-Update
Seita.J014000.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Sobic.003G169100.1	No alias	component *(PsbB/CP47) of PS-II reaction center complex	0.02	Orthogroups_2024-Update
Sopen01g027130	No alias	Photosystem II protein	0.03	Orthogroups_2024-Update
evm.model.contig_2297.1	No alias	(p09447\|psbb_secce : 447.0) Photosystem II P680...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	IEA	InterProScan predictions
BP	GO:0009767	photosynthetic electron transport chain	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016168	chlorophyll binding	IEA	InterProScan predictions
BP	GO:0019684	photosynthesis, light reaction	IEA	InterProScan predictions
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	1	116

External Links

No external refs found!