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  5. PSME_00000176-RA

PSME_00000176-RA


Description : (at4g13650 : 540.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 159.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1080.0) & (original description: no original description)


Gene families : OG_42_0016466 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0016466_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000176-RA
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
Sopen02g021630 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 503 550
IPR002885 Pentatricopeptide_repeat 309 355
IPR002885 Pentatricopeptide_repeat 106 151
IPR002885 Pentatricopeptide_repeat 208 256
IPR002885 Pentatricopeptide_repeat 604 651
IPR002885 Pentatricopeptide_repeat 474 500
IPR002885 Pentatricopeptide_repeat 678 702
IPR002885 Pentatricopeptide_repeat 283 307
IPR002885 Pentatricopeptide_repeat 412 440
IPR002885 Pentatricopeptide_repeat 180 206
IPR002885 Pentatricopeptide_repeat 443 470
IPR002885 Pentatricopeptide_repeat 384 410
IPR002885 Pentatricopeptide_repeat 577 603
IPR002885 Pentatricopeptide_repeat 76 99
No external refs found!