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  5. PSME_00000376-RA

PSME_00000376-RA


Description : (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) - Chlamydomonas reinhardtii & (at3g45980 : 151.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000376-RA
Cluster HCCA clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
At2g28720 No alias Histone H2B.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI96] 0.02 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.03 Orthogroups_2024-Update
At5g59910 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2] 0.02 Orthogroups_2024-Update
Bradi1g08860 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g47980 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Bradi1g56057 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g66380 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g23230 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g27760 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g265400 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G071959 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G079089 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU1Hr1G066130.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU6Hr1G015790.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update
LOC_Os01g05900 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.04 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.06 Orthogroups_2024-Update
MA_10435143g0020 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.06 Orthogroups_2024-Update
Pp1s117_2V6 No alias histone h2b 0.03 Orthogroups_2024-Update
Sobic.003G067500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.004G265400.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Sobic.007G149600.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.02 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.02 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.03 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.04 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.02 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.02 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 21 139
No external refs found!