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  5. PSME_00000614-RA

PSME_00000614-RA


Description : (at5g38110 : 207.0) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.; anti- silencing function 1b (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 414.0) & (original description: no original description)


Gene families : OG_42_0003124 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003124_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000614-RA
Cluster HCCA clusters: Cluster_463

Target Alias Description ECC score Gene Family Method Actions
Kfl00141_0070 kfl00141_0070_v1.1 (at1g66740 : 256.0) Located on the SSL2 region of... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006333 chromatin assembly or disassembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006818 ASF1-like 3 154
No external refs found!