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  5. PSME_00000647-RA

PSME_00000647-RA


Description : (at1g59870 : 1668.0) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acidñdependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.; PENETRATION 3 (PEN3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, cadmium ion transmembrane transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 392230 Blast hits to 282257 proteins in 3986 species: Archae - 7583; Bacteria - 315608; Metazoa - 9692; Fungi - 7346; Plants - 6702; Viruses - 4; Other Eukaryotes - 45295 (source: NCBI BLink). & (q5z9s8|pdr12_orysa : 1628.0) Pleiotropic drug resistance protein 12 - Oryza sativa (Rice) & (reliability: 3336.0) & (original description: no original description)


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000647-RA
Cluster HCCA clusters: Cluster_357

Target Alias Description ECC score Gene Family Method Actions
A4A49_09054 No alias pleiotropic drug resistance protein 1 0.03 Orthogroups_2024-Update
A4A49_13046 No alias pleiotropic drug resistance protein 1 0.02 Orthogroups_2024-Update
A4A49_23886 No alias pleiotropic drug resistance protein 1 0.03 Orthogroups_2024-Update
Cre04.g224400 No alias pleiotropic drug resistance 7 0.01 Orthogroups_2024-Update
Cre16.g648700 No alias pleiotropic drug resistance 5 0.01 Orthogroups_2024-Update
Glyma.02G159900 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
LOC_Os01g42410 No alias pleiotropic drug resistance protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g36090 No alias ABC-2 type transporter, putative, expressed 0.01 Orthogroups_2024-Update
Seita.5G125600.1 No alias cuticular lipid exporter *(PEC1) & subfamily ABCG transporter 0.06 Orthogroups_2024-Update
Sobic.001G190900.1 No alias subfamily ABCG transporter 0.05 Orthogroups_2024-Update
Sobic.008G033700.2 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc08g067620 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen06g024190 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update
Sopen12g034810 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR029481 ABC_trans_N 80 133
IPR003439 ABC_transporter-like 887 1039
IPR013525 ABC_2_trans 495 706
IPR013525 ABC_2_trans 1181 1394
IPR013581 PDR_assoc 711 773
IPR003439 ABC_transporter-like 158 339
No external refs found!