Sopen05g017510


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g017510
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Solyc04g040100 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.02 Orthogroups_2024-Update
Sopen04g018990 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g028470 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g013220 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1312 1423
IPR005162 Retrotrans_gag_dom 215 311
IPR000477 RT_dom 772 932
No external refs found!