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  5. PSME_00000838-RA

PSME_00000838-RA


Description : (at1g75660 : 526.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 1052.0) & (original description: no original description)


Gene families : OG_42_0000619 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000619_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000838-RA
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
A4A49_08771 No alias 5'-3' exoribonuclease 4 0.02 Orthogroups_2024-Update
Bradi2g56440 No alias 5\'-3\' exoribonuclease 3 0.02 Orthogroups_2024-Update
Glyma.17G257100 No alias 5\'-3\' exoribonuclease 3 0.03 Orthogroups_2024-Update
PSME_00003771-RA No alias (at1g75660 : 288.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
Seita.6G040000.1 No alias exoribonuclease *(RAT1/XRN2) 0.02 Orthogroups_2024-Update
Seita.9G057500.1 No alias exoribonuclease *(XRN4) 0.02 Orthogroups_2024-Update
evm.model.tig00000241.175 No alias (at1g75660 : 257.0) Encodes a protein with similarity to... 0.01 Orthogroups_2024-Update
evm.model.tig00000241.176 No alias (at1g75660 : 219.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
evm.model.tig00001164.8 No alias (at5g42540 : 137.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004527 exonuclease activity IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004859 Put_53exo 1 95
IPR004859 Put_53exo 102 267
IPR001878 Znf_CCHC 277 291
No external refs found!