1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00000850-RA

PSME_00000850-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00000850-RA
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
A4A49_25134 No alias ethylene-responsive transcription factor 1b 0.03 Orthogroups_2024-Update
A4A49_27754 No alias ethylene-responsive transcription factor 1a 0.04 Orthogroups_2024-Update
Bradi1g23756 No alias related to AP2 11 0.02 Orthogroups_2024-Update
Bradi4g35580 No alias C-repeat/DRE binding factor 1 0.02 Orthogroups_2024-Update
Brara.A00653.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.07G250100 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G079100 No alias ethylene responsive element binding factor 2 0.03 Orthogroups_2024-Update
Glyma.19G164100 No alias ethylene response factor 1 0.04 Orthogroups_2024-Update
HORVU6Hr1G074970.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
HORVU7Hr1G089930.5 No alias cutin and suberin biosynthesis transcription factor... 0.04 Orthogroups_2024-Update
LOC_Os02g32140 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_19532g0010 No alias (at3g16770 : 106.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
Mp6g18650.1 No alias transcription factor (ERF). transcription factor (ERN1) 0.03 Orthogroups_2024-Update
PSME_00047383-RA No alias (at5g21960 : 119.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00056166-RA No alias (at5g11590 : 103.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
Potri.002G043300 No alias erf domain protein 9 0.04 Orthogroups_2024-Update
Pp1s61_230V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G100500.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G171300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G283300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g078640 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.04 Orthogroups_2024-Update
Sopen02g016210 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen02g033000 No alias AP2 domain 0.04 Orthogroups_2024-Update
Sopen08g003200 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen08g026670 No alias AP2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 126 172
No external refs found!