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  5. Sopen05g017590

Sopen05g017590


Description : Retrotransposon gag protein


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g017590
Cluster HCCA clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU4Hr1G045770.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os04g21580 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Solyc11g028190 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g008360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g008430 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g013800 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.04 Orthogroups_2024-Update
Sopen02g006530 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen03g017250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g019160 No alias Reverse transcriptase-like 0.04 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen08g007650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen10g005990 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 38 120
IPR001878 Znf_CCHC 233 249
No external refs found!