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PSME_00001004-RA


Description : (at5g20490 : 1741.0) Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.; XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink). & (reliability: 3482.0) & (original description: no original description)


Gene families : OG_42_0000130 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001004-RA
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
A4A49_18789 No alias myosin-6 0.02 Orthogroups_2024-Update
Brara.E01679.1 No alias class VIII myosin microfilament-based motor protein 0.02 Orthogroups_2024-Update
GRMZM2G476843 No alias Myosin family protein with Dil domain 0.02 Orthogroups_2024-Update
Glyma.09G284800 No alias myosin 1 0.02 Orthogroups_2024-Update
Mp8g04010.1 No alias C3H zinc finger transcription factor. class XI myosin... 0.01 Orthogroups_2024-Update
Pp1s199_21V6 No alias myosin 0.02 Orthogroups_2024-Update
Solyc06g008530 No alias Myosin XI, putative (AHRD V3.3 *** B9S7I4_RICCO) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016459 myosin complex IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001609 Myosin_head_motor_dom 66 722
IPR002710 Dilute_dom 1314 1389
IPR000048 IQ_motif_EF-hand-BS 764 783
IPR004009 Myosin_N 12 50
No external refs found!