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  5. PSME_00001016-RA

PSME_00001016-RA


Description : (at5g43810 : 1422.0) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.; ZWILLE (ZLL); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1). & (reliability: 2844.0) & (original description: no original description)


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001016-RA
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
A4A49_36480 No alias protein argonaute 1b 0.03 Orthogroups_2024-Update
Bradi1g54977 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Bradi2g10360 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Bradi3g60697 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.05 Orthogroups_2024-Update
GRMZM2G059033 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
GRMZM2G450474 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
Glyma.01G053100 No alias Argonaute family protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G012490.26 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
HORVU2Hr1G031130.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G103840.26 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g45070 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g39640 No alias PINHEAD, putative, expressed 0.03 Orthogroups_2024-Update
Mp8g08610.1 No alias siRNA-integrating factor (AGO) 0.02 Orthogroups_2024-Update
Potri.015G029000 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Seita.4G225900.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.01 Orthogroups_2024-Update
Seita.7G236800.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Seita.9G138800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G053700.2 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.001G136000.4 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G136150.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.006G215000.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.07 Orthogroups_2024-Update
Solyc03g098280 No alias Argonaute 1b 0.03 Orthogroups_2024-Update
Solyc12g006790 No alias Argonaute10b 0.02 Orthogroups_2024-Update
Sopen02g018440 No alias Piwi domain 0.02 Orthogroups_2024-Update
evm.model.contig_2082.8 No alias (at1g48410 : 352.0) Encodes an RNA Slicer that... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR014811 ArgoL1 231 280
IPR003100 PAZ_dom 329 432
IPR032474 Argonaute_N 81 221
IPR003165 Piwi 592 911
IPR032473 Argonaute_Mid_dom 500 578
IPR032472 ArgoL2 443 489
No external refs found!