PSME_00001200-RA

Description : (at4g03210 : 352.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39857|xth_soybn : 318.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (reliability: 704.0) & (original description: no original description)

Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00001200-RA
Cluster	HCCA clusters: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
267868	No alias	xyloglucan endotransglucosylase/hydrolase 5	0.03	Orthogroups_2024-Update
At4g25820	No alias	Xyloglucan endotransglucosylase/hydrolase...	0.02	Orthogroups_2024-Update
Bradi1g27867	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.02	Orthogroups_2024-Update
Bradi1g33810	No alias	Xyloglucan endotransglucosylase/hydrolase family protein	0.03	Orthogroups_2024-Update
Bradi1g44777	No alias	xyloglucan endotransglucosylase/hydrolase 1	0.02	Orthogroups_2024-Update
Brara.A00716.1	No alias	EC_2.4 glycosyltransferase	0.02	Orthogroups_2024-Update
GRMZM5G886185	No alias	xyloglucan endotransglucosylase/hydrolase 12	0.02	Orthogroups_2024-Update
Glyma.12G178000	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.02	Orthogroups_2024-Update
Glyma.12G197600	No alias	xyloglucan endotransglucosylase/hydrolase 9	0.02	Orthogroups_2024-Update
LOC_Os11g33270	No alias	glycosyl hydrolases family 16, putative, expressed	0.02	Orthogroups_2024-Update
MA_10251013g0010	No alias	(q39857\|xth_soybn : 462.0) Probable xyloglucan...	0.05	Orthogroups_2024-Update
MA_20669g0010	No alias	(at2g36870 : 290.0) xyloglucan...	0.03	Orthogroups_2024-Update
MA_848882g0010	No alias	(at5g65730 : 338.0) xyloglucan...	0.03	Orthogroups_2024-Update
Mp4g00700.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
PSME_00010987-RA	No alias	(at3g44990 : 278.0) xyloglucan endo-transglycosylase;...	0.05	Orthogroups_2024-Update
PSME_00011921-RA	No alias	(at4g03210 : 296.0) encodes a member of xyloglucan...	0.02	Orthogroups_2024-Update
PSME_00017708-RA	No alias	(at4g03210 : 291.0) encodes a member of xyloglucan...	0.05	Orthogroups_2024-Update
PSME_00024552-RA	No alias	(p35694\|bru1_soybn : 333.0) Brassinosteroid-regulated...	0.04	Orthogroups_2024-Update
PSME_00039728-RA	No alias	(q39857\|xth_soybn : 318.0) Probable xyloglucan...	0.05	Orthogroups_2024-Update
PSME_00040364-RA	No alias	(at4g03210 : 145.0) encodes a member of xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00044296-RA	No alias	(q41638\|xtha_phaan : 485.0) Xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00047248-RA	No alias	(p35694\|bru1_soybn : 257.0) Brassinosteroid-regulated...	0.04	Orthogroups_2024-Update
PSME_00047953-RA	No alias	(at5g57550 : 312.0) xyloglucan...	0.04	Orthogroups_2024-Update
Pp1s122_57V6	No alias	brassinosteroid-regulated protein bru1	0.02	Orthogroups_2024-Update
Pp1s309_41V6	No alias	xyloglucan endotransglucosylase hydrolase protein a	0.02	Orthogroups_2024-Update
Pp1s410_28V6	No alias	Probable xyloglucan endotransglucosylase/hydrolase...	0.03	Orthogroups_2024-Update
Sobic.010G246700.1	No alias	EC_2.4 glycosyltransferase	0.02	Orthogroups_2024-Update
Solyc03g093080	No alias	Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
Solyc03g093110	No alias	xyloglucan endotransglucosylase-hydrolase	0.02	Orthogroups_2024-Update
Sopen03g023900	No alias	Glycosyl hydrolases family 16	0.03	Orthogroups_2024-Update
Sopen07g026530	No alias	Glycosyl hydrolases family 16	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
CC	GO:0048046	apoplast	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0003777	microtubule motor activity	IEP	Predicted GO
MF	GO:0004519	endonuclease activity	IEP	Predicted GO
MF	GO:0004521	endoribonuclease activity	IEP	Predicted GO
MF	GO:0004540	ribonuclease activity	IEP	Predicted GO
BP	GO:0006928	movement of cell or subcellular component	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
BP	GO:0007018	microtubule-based movement	IEP	Predicted GO
BP	GO:0007062	sister chromatid cohesion	IEP	Predicted GO
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
BP	GO:0022402	cell cycle process	IEP	Predicted GO
CC	GO:0031390	Ctf18 RFC-like complex	IEP	Predicted GO
BP	GO:0051276	chromosome organization	IEP	Predicted GO
BP	GO:1903047	mitotic cell cycle process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010713	XET_C	240	285
IPR000757	GH16	41	215

External Links

No external refs found!

PSME_00001200-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation