PSME_00001206-RA

Description : (at4g03210 : 299.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39857|xth_soybn : 266.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (reliability: 598.0) & (original description: no original description)

Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00001206-RA
Cluster	HCCA clusters: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method
A4A49_21656	No alias	xyloglucan endotransglucosylasehydrolase protein 24	0.02	Orthogroups_2024-Update
A4A49_26737	No alias	xyloglucan endotransglucosylasehydrolase protein 15	0.02	Orthogroups_2024-Update
A4A49_37940	No alias	xyloglucan endotransglucosylasehydrolase protein 9	0.02	Orthogroups_2024-Update
At2g06850	No alias	Xyloglucan endotransglucosylase/hydrolase protein 4...	0.03	Orthogroups_2024-Update
At4g03210	No alias	Xyloglucan endotransglucosylase/hydrolase...	0.02	Orthogroups_2024-Update
Brara.B01205.1	No alias	EC_2.4 glycosyltransferase	0.03	Orthogroups_2024-Update
Brara.K00838.1	No alias	EC_2.4 glycosyltransferase	0.02	Orthogroups_2024-Update
Glyma.11G044800	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.03	Orthogroups_2024-Update
Glyma.13G322500	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.03	Orthogroups_2024-Update
Glyma.17G157400	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.03	Orthogroups_2024-Update
HORVU7Hr1G086890.2	No alias	xyloglucan endotransglucosylase/hydrolase *(XTH) &...	0.03	Orthogroups_2024-Update
LOC_Os06g48180	No alias	glycosyl hydrolases family 16, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g33270	No alias	glycosyl hydrolases family 16, putative, expressed	0.02	Orthogroups_2024-Update
MA_15222g0020	No alias	(at3g44990 : 243.0) xyloglucan endo-transglycosylase;...	0.03	Orthogroups_2024-Update
Mp2g17810.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
Mp2g21520.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.03	Orthogroups_2024-Update
Mp3g22120.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
Mp4g00700.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
PSME_00009508-RA	No alias	(at5g13870 : 295.0) EXGT-A4, endoxyloglucan...	0.05	Orthogroups_2024-Update
PSME_00009509-RA	No alias	(at5g57530 : 295.0) xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00013047-RA	No alias	(q41638\|xtha_phaan : 220.0) Xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00015816-RA	No alias	(at4g25810 : 292.0) xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00031691-RA	No alias	(p35694\|bru1_soybn : 332.0) Brassinosteroid-regulated...	0.06	Orthogroups_2024-Update
PSME_00032821-RA	No alias	(p35694\|bru1_soybn : 309.0) Brassinosteroid-regulated...	0.05	Orthogroups_2024-Update
PSME_00033177-RA	No alias	(at4g25810 : 347.0) xyloglucan...	0.03	Orthogroups_2024-Update
Potri.006G169900	No alias	xyloglucan endotransglycosylase 6	0.03	Orthogroups_2024-Update
Seita.4G162400.1	No alias	EC_2.4 glycosyltransferase	0.03	Orthogroups_2024-Update
Seita.9G573900.1	No alias	xyloglucan endotransglucosylase/hydrolase *(XTH) &...	0.02	Orthogroups_2024-Update
Sopen07g026530	No alias	Glycosyl hydrolases family 16	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
CC	GO:0048046	apoplast	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001871	pattern binding	IEP	Predicted GO
MF	GO:0004497	monooxygenase activity	IEP	Predicted GO
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
MF	GO:0050661	NADP binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000757	GH16	38	214
IPR010713	XET_C	241	286

External Links

No external refs found!

PSME_00001206-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation