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  5. PSME_00001277-RA

PSME_00001277-RA


Description : (at5g52040 : 285.0) encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.; RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor 35 (TAIR:AT4G25500.3); Has 11943 Blast hits to 9562 proteins in 408 species: Archae - 0; Bacteria - 134; Metazoa - 7691; Fungi - 1361; Plants - 1617; Viruses - 110; Other Eukaryotes - 1030 (source: NCBI BLink). & (reliability: 570.0) & (original description: no original description)


Gene families : OG_42_0001097 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001277-RA
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
A4A49_21300 No alias serinearginine-rich splicing factor rs41 0.02 Orthogroups_2024-Update
HORVU6Hr1G011910.30 No alias RNA splicing factor *(RS31/40/41) 0.03 Orthogroups_2024-Update
PSME_00035961-RA No alias (at4g25500 : 255.0) encodes an arginine/serine-rich... 0.05 Orthogroups_2024-Update
Seita.9G568700.1 No alias RNA splicing factor *(RS31/40/41) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 63
IPR000504 RRM_dom 98 160
No external refs found!