PSME_00001292-RA

Description : (at4g35290 : 567.0) Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family; glutamate receptor 2 (GLUR2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular sodium ion homeostasis, cellular potassium ion homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2 (TAIR:AT2G17260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q7xp59|glr31_orysa : 508.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 1134.0) & (original description: no original description)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00001292-RA
Cluster	HCCA clusters: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
At5g27100	No alias	Glutamate receptor 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O04660]	0.02	Orthogroups_2024-Update
Bradi1g26030	No alias	glutamate receptor 3.4	0.02	Orthogroups_2024-Update
Bradi1g31350	No alias	glutamate receptor 2.2	0.05	Orthogroups_2024-Update
Bradi4g30840	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Bradi4g30850	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Bradi4g30860	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Bradi4g30880	No alias	glutamate receptor 2.7	0.07	Orthogroups_2024-Update
Brara.F03008.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Brara.J00340.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
GRMZM2G139933	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Glyma.06G233900	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Glyma.13G093332	No alias	glutamate receptor 2.5	0.03	Orthogroups_2024-Update
Glyma.13G172100	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Glyma.13G233400	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Glyma.13G272400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Glyma.14G001100	No alias	glutamate receptor 2	0.03	Orthogroups_2024-Update
HORVU2Hr1G064530.8	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU2Hr1G104920.12	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU5Hr1G063510.2	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU5Hr1G072170.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
LOC_Os02g54640	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os04g49570	No alias	glutamate receptor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g06130	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g08900	No alias	glutamate receptor 2.6 precursor, putative, expressed	0.02	Orthogroups_2024-Update
MA_10140272g0010	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
MA_10426811g0010	No alias	(at1g05200 : 243.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
MA_11333g0010	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
MA_9224859g0010	No alias	(at4g35290 : 187.0) Encodes a putative glutamate...	0.05	Orthogroups_2024-Update
MA_958834g0010	No alias	(at4g35290 : 358.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
PSME_00000830-RA	No alias	(at2g29100 : 521.0) member of Putative ligand-gated ion...	0.08	Orthogroups_2024-Update
PSME_00001098-RA	No alias	(at2g29120 : 637.0) member of Putative ligand-gated ion...	0.06	Orthogroups_2024-Update
PSME_00001291-RA	No alias	(at4g35290 : 534.0) Encodes a putative glutamate...	0.06	Orthogroups_2024-Update
PSME_00007782-RA	No alias	(at2g17260 : 247.0) Encodes a glutamate receptor....	0.06	Orthogroups_2024-Update
PSME_00010771-RA	No alias	(at1g42540 : 809.0) member of Putative ligand-gated ion...	0.06	Orthogroups_2024-Update
PSME_00020365-RA	No alias	(at2g29120 : 505.0) member of Putative ligand-gated ion...	0.06	Orthogroups_2024-Update
PSME_00021964-RA	No alias	(at1g05200 : 282.0) member of Putative ligand-gated ion...	0.06	Orthogroups_2024-Update
PSME_00023170-RA	No alias	(at1g42540 : 830.0) member of Putative ligand-gated ion...	0.09	Orthogroups_2024-Update
PSME_00027643-RA	No alias	(at2g29120 : 565.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00032127-RA	No alias	(at4g35290 : 436.0) Encodes a putative glutamate...	0.07	Orthogroups_2024-Update
PSME_00033212-RA	No alias	(at1g42540 : 242.0) member of Putative ligand-gated ion...	0.07	Orthogroups_2024-Update
PSME_00037073-RA	No alias	(at2g17260 : 246.0) Encodes a glutamate receptor....	0.08	Orthogroups_2024-Update
PSME_00037074-RA	No alias	(at1g05200 : 98.6) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00049912-RA	No alias	(at2g32390 : 138.0) Encodes a ionotropic glutamate...	0.04	Orthogroups_2024-Update
Potri.006G172100	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Potri.011G062750	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Potri.011G062900	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Potri.018G012100	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.018G012300	No alias	glutamate receptor 2.8	0.04	Orthogroups_2024-Update
Potri.018G096500	No alias	glutamate receptor 2.8	0.02	Orthogroups_2024-Update
Potri.019G091800	No alias	glutamate receptor 2.2	0.02	Orthogroups_2024-Update
Seita.1G009400.1	No alias	ligand-gated cation channel *(GLR)	0.01	Orthogroups_2024-Update
Seita.1G113000.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Seita.1G346100.1	No alias	ligand-gated cation channel *(GLR)	0.06	Orthogroups_2024-Update
Seita.2G212900.1	No alias	ligand-gated cation channel *(GLR)	0.06	Orthogroups_2024-Update
Sobic.002G208700.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Sobic.002G209100.1	No alias	ligand-gated cation channel *(GLR)	0.06	Orthogroups_2024-Update
Sobic.004G013200.2	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
Sobic.004G324000.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.010G068600.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Sobic.010G231500.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sopen01g054310	No alias	Receptor family ligand binding region	0.01	Orthogroups_2024-Update
Sopen06g022650	No alias	Receptor family ligand binding region	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	InterProScan predictions
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008066	glutamate receptor activity	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Predicted GO
MF	GO:0003883	CTP synthase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008150	biological_process	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008483	transaminase activity	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001638	Solute-binding_3/MltF_N	495	809
IPR001828	ANF_lig-bd_rcpt	53	413
IPR001320	Iontro_rcpt	810	840

External Links

No external refs found!

PSME_00001292-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation