PSME_00001413-RA

Description : (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons.; DEFECTIVELY ORGANIZED TRIBUTARIES 4 (DOT4); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G16860.1); Has 49728 Blast hits to 14531 proteins in 279 species: Archae - 0; Bacteria - 13; Metazoa - 210; Fungi - 140; Plants - 48642; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). & (q76c99|rf1_orysa : 163.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1050.0) & (original description: no original description)

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00001413-RA
Cluster	HCCA clusters: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
At1g33350	No alias	Pentatricopeptide repeat-containing protein At1g33350...	0.03	Orthogroups_2024-Update
Bradi2g09423	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
Bradi5g27691	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Orthogroups_2024-Update
Brara.E03381.1	No alias	RNA editing factor *(MEF19)	0.04	Orthogroups_2024-Update
GRMZM2G332843	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Glyma.07G068600	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
Glyma.10G277600	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update
HORVU0Hr1G001760.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU0Hr1G023470.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
MA_210823g0010	No alias	(at4g37170 : 594.0) Pentatricopeptide repeat (PPR)...	0.04	Orthogroups_2024-Update
MA_25729g0010	No alias	(at2g22070 : 551.0) pentatricopeptide (PPR)...	0.06	Orthogroups_2024-Update
MA_658463g0010	No alias	(at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like...	0.05	Orthogroups_2024-Update
MA_771696g0010	No alias	(at1g20230 : 490.0) Pentatricopeptide repeat (PPR)...	0.05	Orthogroups_2024-Update
PSME_00005244-RA	No alias	(at3g46790 : 286.0) Encodes a member of a PCMP (plant...	0.04	Orthogroups_2024-Update
Pp1s68_207V6	No alias	ppr gene for putative pentatricopeptide repeat-like protein PPR	0.03	Orthogroups_2024-Update
Seita.1G215700.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Seita.9G489500.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.002G403500.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.010G097700.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Solyc07g008480	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen02g018640	No alias	PPR repeat family	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003774	motor activity	None	Extended
MF	GO:0003777	microtubule motor activity	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006928	movement of cell or subcellular component	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007018	microtubule-based movement	IEA	InterProScan predictions
MF	GO:0008017	microtubule binding	IEA	InterProScan predictions
MF	GO:0008092	cytoskeletal protein binding	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015631	tubulin binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004427	inorganic diphosphatase activity	IEP	Predicted GO
MF	GO:0004497	monooxygenase activity	IEP	Predicted GO
MF	GO:0004506	squalene monooxygenase activity	IEP	Predicted GO
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0009678	hydrogen-translocating pyrophosphatase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predicted GO
MF	GO:0016791	phosphatase activity	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001752	Kinesin_motor_dom	693	752
IPR002885	Pentatricopeptide_repeat	135	182
IPR002885	Pentatricopeptide_repeat	540	587
IPR002885	Pentatricopeptide_repeat	237	285
IPR002885	Pentatricopeptide_repeat	439	487
IPR002885	Pentatricopeptide_repeat	337	381
IPR002885	Pentatricopeptide_repeat	43	65
IPR002885	Pentatricopeptide_repeat	312	331
IPR002885	Pentatricopeptide_repeat	73	99
IPR002885	Pentatricopeptide_repeat	211	236
IPR002885	Pentatricopeptide_repeat	615	638
IPR002885	Pentatricopeptide_repeat	514	539

External Links

No external refs found!

PSME_00001413-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation