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  5. PSME_00001436-RA

PSME_00001436-RA


Description : (at1g03010 : 601.0) Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus, pollen tube growth; EXPRESSED IN: leaf apex, inflorescence meristem, cauline leaf, root, flower; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1); Has 882 Blast hits to 854 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 870; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (q5ks50|nph3_orysa : 368.0) Coleoptile phototropism protein 1 (Non-phototropic hypocotyl 3-like protein) (NPH3-like protein) - Oryza sativa (Rice) & (reliability: 1202.0) & (original description: no original description)


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001436-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
231529 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
74933 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
A4A49_04030 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
A4A49_07500 No alias btbpoz domain-containing protein 0.03 Orthogroups_2024-Update
A4A49_09404 No alias btbpoz domain-containing protein 0.04 Orthogroups_2024-Update
A4A49_15233 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
A4A49_23551 No alias btbpoz domain-containing protein 0.03 Orthogroups_2024-Update
A4A49_25271 No alias btbpoz domain-containing protein npy2 0.04 Orthogroups_2024-Update
A4A49_28201 No alias root phototropism protein 3 0.02 Orthogroups_2024-Update
A4A49_30200 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
At5g03250 No alias BTB/POZ domain-containing protein At5g03250... 0.03 Orthogroups_2024-Update
Bradi1g70761 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Bradi4g30480 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Brara.F02979.1 No alias substrate adaptor of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Brara.G01248.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.06 Orthogroups_2024-Update
Brara.G02549.1 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
Brara.H01888.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.04 Orthogroups_2024-Update
Brara.I00846.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
Brara.I00961.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Brara.K01221.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Glyma.03G080600 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.05G178500 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.08G135600 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.10G258000 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.12G180400 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.15G056500 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.17G161600 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G013420.5 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
HORVU6Hr1G015480.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
LOC_Os01g57230 No alias BTBN1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain... 0.03 Orthogroups_2024-Update
LOC_Os03g43990 No alias BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain... 0.02 Orthogroups_2024-Update
LOC_Os03g52880 No alias BTBN9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain... 0.02 Orthogroups_2024-Update
LOC_Os03g55830 No alias BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
LOC_Os07g44570 No alias root phototropism protein 3, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g02620 No alias BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
MA_7675g0010 No alias (at5g48800 : 618.0) Phototropic-responsive NPH3 family... 0.05 Orthogroups_2024-Update
PSME_00027120-RA No alias (q9lef0|gpx4_mescr : 145.0) Probable phospholipid... 0.03 Orthogroups_2024-Update
PSME_00048349-RA No alias (at5g48800 : 604.0) Phototropic-responsive NPH3 family... 0.02 Orthogroups_2024-Update
PSME_00049816-RA No alias (at1g67900 : 654.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
Potri.002G209700 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.006G264300 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.007G033900 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Potri.007G093000 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.007G112600 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.010G046800 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Potri.014G133500 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Pp1s190_58V6 No alias No description available 0.03 Orthogroups_2024-Update
Pp1s67_83V6 No alias protein binding 0.02 Orthogroups_2024-Update
Pp1s96_183V6 No alias protein binding 0.02 Orthogroups_2024-Update
Seita.6G074900.1 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.04 Orthogroups_2024-Update
Seita.7G018400.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
Seita.8G012000.1 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
Sobic.001G077200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G168800.2 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Sobic.004G187100.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Solyc10g047530 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g049440 No alias NPH3 family 0.04 Orthogroups_2024-Update
Sopen02g014820 No alias NPH3 family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 261 543
No external refs found!