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  5. PSME_00001479-RA

PSME_00001479-RA


Description : (at4g34160 : 239.0) encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.; CYCLIN D3;1 (CYCD3;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 3155 Blast hits to 3153 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1504; Fungi - 362; Plants - 1012; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001479-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
At3g50070 No alias CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15] 0.03 Orthogroups_2024-Update
Brara.D01336.1 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Brara.I00217.1 No alias regulatory protein *(CYCD) of cell cycle 0.05 Orthogroups_2024-Update
GRMZM2G007130 No alias cyclin d5;1 0.02 Orthogroups_2024-Update
GRMZM2G546369 No alias CYCLIN D4;1 0.02 Orthogroups_2024-Update
Glyma.02G212400 No alias Cyclin D2;1 0.04 Orthogroups_2024-Update
Glyma.14G086200 No alias CYCLIN D3;1 0.03 Orthogroups_2024-Update
MA_10429174g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_17738g0010 No alias (at3g50070 : 241.0) Encode CYCD3;3, a CYCD3 D-type... 0.06 Orthogroups_2024-Update
Mp1g24670.1 No alias no hits & (original description: none) 0.01 Orthogroups_2024-Update
PSME_00001419-RA No alias (at2g22490 : 187.0) encodes a D-type cyclin whose... 0.04 Orthogroups_2024-Update
PSME_00005614-RA No alias (at4g34160 : 209.0) encodes a cyclin D-type protein... 0.02 Orthogroups_2024-Update
Potri.007G055300 No alias cyclin d5;1 0.03 Orthogroups_2024-Update
Potri.014G016700 No alias cyclin d5;1 0.02 Orthogroups_2024-Update
Potri.014G023000 No alias CYCLIN D3;1 0.02 Orthogroups_2024-Update
Seita.4G104200.1 No alias regulatory protein *(CYCD) of cell cycle 0.04 Orthogroups_2024-Update
Sobic.005G231400.2 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Sobic.007G160300.1 No alias regulatory protein *(CYCD) of cell cycle 0.04 Orthogroups_2024-Update
Solyc07g054950 No alias cyclinD6_1 0.03 Orthogroups_2024-Update
Solyc12g088650 No alias cyclinD3_2 0.02 Orthogroups_2024-Update
Sopen00g010940 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen00g014060 No alias hypothetical protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 191 285
IPR006671 Cyclin_N 80 189
No external refs found!