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  5. PSME_00001574-RA

PSME_00001574-RA


Description : (q76fs3|tbb6_orysa : 424.0) Tubulin beta-6 chain (Beta-6 tubulin) - Oryza sativa (Rice) & (at5g12250 : 419.0) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.; beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 838.0) & (original description: no original description)


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001574-RA
Cluster HCCA clusters: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
170592 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
23468 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
266715 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
402668 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
408201 No alias tubulin beta 8 0.04 Orthogroups_2024-Update
At1g75780 No alias Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411] 0.04 Orthogroups_2024-Update
At2g29550 No alias Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515] 0.03 Orthogroups_2024-Update
At5g12250 No alias Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2] 0.03 Orthogroups_2024-Update
Bradi2g10970 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Bradi2g52790 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Brara.K01811.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Cre12.g542250 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Cre12.g549550 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Kfl00215_0170 kfl00215_0170_v1.1 (p04690|tbb_chlre : 825.0) Tubulin beta-1/beta-2 chain -... 0.01 Orthogroups_2024-Update
Kfl00215_0220 kfl00215_0220_v1.1 (p04690|tbb_chlre : 826.0) Tubulin beta-1/beta-2 chain -... 0.02 Orthogroups_2024-Update
MA_79708g0010 No alias (p18026|tbb2_maize : 471.0) Tubulin beta-2 chain (Beta-2... 0.04 Orthogroups_2024-Update
Mp2g16780.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
PSME_00017671-RA No alias (p93176|tbb_horvu : 390.0) Tubulin beta chain (Beta... 0.05 Orthogroups_2024-Update
Pp1s35_125V6 No alias beta chain 0.02 Orthogroups_2024-Update
evm.model.tig00001067.14 No alias (p04690|tbb_chlre : 810.0) Tubulin beta-1/beta-2 chain -... 0.01 Orthogroups_2024-Update
evm.model.tig00001067.6 No alias (p04690|tbb_chlre : 752.0) Tubulin beta-1/beta-2 chain -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
No external refs found!